CDS

Accession Number TCMCG051C32053
gbkey CDS
Protein Id XP_024466285.1
Location join(20134893..20135504,20137147..20137431,20137578..20137994,20138104..20138298,20138386..20138546,20139291..20140164)
Gene LOC7489610
GeneID 7489610
Organism Populus trichocarpa

Protein

Length 847aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024610517.1
Definition protein RDM16 isoform X1 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category A
Description U4 U6 small nuclear ribonucleoprotein
KEGG_TC -
KEGG_Module M00354        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12843        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009793        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030532        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044030        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046540        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051052        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097525        [VIEW IN EMBL-EBI]
GO:0097526        [VIEW IN EMBL-EBI]
GO:0120114        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATCGCTCCTCCAAGCGCACCCGTGACGACCGTGACCGTGACCACCACAAACACCGATCACGAGACGATAAGCACCGAGACTCCTCCGATTCTCACCACCACCGATCAGAGAGAGAATCTCACCATCGCGACCATCACAAATCATCTAGGCGCGATGATACTAAGCGCGAAAGATCTCGCGAGCGAGAAGAGAGTGTAGATAGGCGAGAGAGATCTCACGATCACAAATCATCTTCCTCATCGAGGCGTGAGGACAGAGAGAGATCGTATGATGCGAGAGAGGAGAGAGAAGGGAGTAGAGAGAGAAAGCGCGAGAAGAGAGAGAGAGAAATTGAAGAGGAGGATTATTTTGAGAGAAAGAAGAGAAAAGAGAGAGGAGGGAGTGAAGATAGGGTTGTTGTTGACAAGGAGAAGAGGAGTAGAAGAAGATTTGGCGAAAAAGTGAAAGAAGAGGATAATAGTATTGATACCAATAATAATGGTAATAGTTTTGAGAATGTGAAGAGTGTGGATTTGAGTGAGGTTAGAGTGAAGGAGGAAGTGAATGGTCAGCCAACTGGTGGCGGCAGTGGCAGCACCACAGAAAACGGTGGTGTTTCGACTGCAAATGGTGCTACTCTGGCAACTTTCACCAAGACACCAAGCAATTTGCCTGAGACCTCTGTGGCCCCTGTCCACCCCCTTCCTACCAAGGTATCTTCAATTTCAAACACAAATGAAAATAAGGGAGTTAGTATTGCCAGATCTCATGAGGTTCCTGGAAAATCTAGTACAGATGGGACAACTTCAGCTGCTGGGAAAAGTGGAAATCTATCACTTGATGCTTTAGCGAAAGCTAAGAAAGCCTTACAAATGCAGAAGGAACTGTCAGAGAAGCTGAAGAAGCTACCCCTGTCGAGTAAGGGTAATAAAAGTTCAGGTGGTAGCTTACAAGGTCTATTGTCATCAGCAACCATTACTACTGCTGTTTCAGTAGAGGCAATGCCAAGTTCATCCACCTCATCTACTAGTACTATGGTGTCTGTAAAGCCACCTGCAACTGGCATGGCACCTCCGCCTGATATTACTAGCATGCCCAATTATGAAGCTGTTAAACGTGCCCAGGAACTCGCTGCTAAAATGGGATTTCGCCAGGACCCTGAGTTTGCTCCTCTTATAAACTTTTTCCCTGGTCAGTTGCCAGCAGAAGTCTCTGCGCTGCAGAAACCTTCTAAGGCCCCTGTTCTTCGTGTGGATGCACTTGGTAGGGAAATAGATGAACATGGAAATGTGGTGAATGTGACTAAACCAAACAACCTCAGCACCCTAAAGGTCAACATCAACAAGCAGAAAAAGGAAGCATTCCAGATTCTTAAACCTGAATTGGATGTGGATCCTGAATCAAATCCTTATTTTGATGCAAAAATGGGAATTAATAAGAATAAATTCTTGAGACCCAAACGGATGACTTTCCAGTTTGTAGAGGAAGGCAAGTGGTTAAAAGAAGCTGAAATAATGAAACTGAGGAATCAATTTGGAGAAGAAAGAGAAAAGGATATGAAGGCAAGGCAAGCATTACATGCGAAGGCAAAGGCAGCTCCTGATATAAATCCTAATTTGATAGAGGTATCAGAGCGAGTTACAACCAAAGCAAAGCCTAAGGATCCAATTCCTGATATTGAGTGGTGGGATGTACCTCTGTTGACTAGTGGGACTTATGGTGAGGATGTTGATGATCTCAAGACCCAGCGTAGATTGAAAATGGAGAAAATTACTATCTATGTGGAGCACCCACGTCCAATTGAGCCCCCGGCTGAGCCAGCTCCTCCCCCACCTCAACCTTTGAAGCTAACTAAGAAGGAGCAGAAGAAGCTCCGTACACAGCGTCGCCTTGCTCGGGAAAAAGATAAACAGGAGATGATTAGACAAGGCTTGATTGAACCTCCAAAACCAAAGGTTAAGATGAGCAATCTAATGAAAGTTCTTGGCTCTGAAGCAACACAAGATCCAACTAGACTTGAAAAGGAAATTCGTACTGCAGCTGCTGAACGTGAACAAGCACATATTGATCGTAATACTGCACGTAAGCTCACTCCCGCTGAGCGTCGTGAAAAGAAGGAGAGAAAGCTCTTTGATGACCCAAATACTGTGGAAACTATTGTTTCTATTTACAGAATCAACGATCTTTCAGACAAGAAAACTCGCTTCAAAGTTGATGTCAATGCTCACGAGAATCGCTTGACTGGATGCACGGTGATTACAGAGGGAATTTGTGTGGTGGTTGTTGAAGGGGGGAGCAAATCCATCAAAAGATATGGAAAACTAATGCTTAGGCGTATAAACTGGGCTGAAGCTGTAAATGAGGATGAAGGAGGTGACAATGACGAGAAACCTATGAACAAATGTGTGCTAGTGTGGCAAGGTAGTGTTGCCAAACCTAACTTCCACAGGTTTTCTTTGCATGAGTGTGTGACTGAAGCTGCAGCCCGAAAATATTTTGCTGATGCTGGTGTTGCCCACTATTGGGATCTTGCTGTCAATTTCTCCGAAGATCAAATGTGA
Protein:  
MDRSSKRTRDDRDRDHHKHRSRDDKHRDSSDSHHHRSERESHHRDHHKSSRRDDTKRERSREREESVDRRERSHDHKSSSSSRREDRERSYDAREEREGSRERKREKREREIEEEDYFERKKRKERGGSEDRVVVDKEKRSRRRFGEKVKEEDNSIDTNNNGNSFENVKSVDLSEVRVKEEVNGQPTGGGSGSTTENGGVSTANGATLATFTKTPSNLPETSVAPVHPLPTKVSSISNTNENKGVSIARSHEVPGKSSTDGTTSAAGKSGNLSLDALAKAKKALQMQKELSEKLKKLPLSSKGNKSSGGSLQGLLSSATITTAVSVEAMPSSSTSSTSTMVSVKPPATGMAPPPDITSMPNYEAVKRAQELAAKMGFRQDPEFAPLINFFPGQLPAEVSALQKPSKAPVLRVDALGREIDEHGNVVNVTKPNNLSTLKVNINKQKKEAFQILKPELDVDPESNPYFDAKMGINKNKFLRPKRMTFQFVEEGKWLKEAEIMKLRNQFGEEREKDMKARQALHAKAKAAPDINPNLIEVSERVTTKAKPKDPIPDIEWWDVPLLTSGTYGEDVDDLKTQRRLKMEKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDKQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRTAAAEREQAHIDRNTARKLTPAERREKKERKLFDDPNTVETIVSIYRINDLSDKKTRFKVDVNAHENRLTGCTVITEGICVVVVEGGSKSIKRYGKLMLRRINWAEAVNEDEGGDNDEKPMNKCVLVWQGSVAKPNFHRFSLHECVTEAAARKYFADAGVAHYWDLAVNFSEDQM